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Jaspreet Kaur Dhanjal, Sonam Grover, Sudhanshu Sharma, Ajeet Kumar Singh and Abhinav Grover. Structural insights into mode of actions of novel natural Mycobacterium protein tyrosine phosphatase B inhibitors.
Matteo Comin and Davide Verzotto. Beyond limited-resolution alignment-free measures for mammalian enhancers sequence comparison.
Jiajie Peng, Yadong Wang and Jin Chen. Towards Integrative Gene Functional Similarity Measurement.
Bin Liu, Jinghao Xu, Quan Zou, Ruifeng Xu, Xiaolong Wang and Qingcai Chen. Using distances between Top-n-gram and residue pairs for protein remote homology detection.
Hui Liu, Hongbo Liu, Yanjun Wei, Haidan Yan, Jianzhong Su, Guofeng Zhao and Yan Zhang. Detection of T2D-related modules and genes based on epigenetic networks.
Yongnan Li, Limin Xiao and Li Ruan. Parallel molecular computation of modular-multiplication using self-assembly of DNA tiles.
Sangseob Leem, Hyun-Hwan Jeong, Jungseob Lee, Kyubum Wee and Kyung-Ah Sohn. Fast detection of high-order epistatic interactions in genome-wide association studies using information theoretic measure.
Sayaka Mizutani, Yousuke Noro, Masaaki Kotera and Susumu Goto. Pharmacoepidemiological characterization of drug-induced adverse reaction clusters towards understanding of their mechanisms.
Daniel E. Platt, Filippo Utro and Laxmi Parida. Effect of sampling on the extent and accuracy of the inferred genetic history of recombining genome.
Haijun Gong, Tong Tong Wu and Edmund Clarke. Pathway-gene identification for pancreatic cancer survival via doubly regularized Cox regression.
Inuk Jung and Sun Kim. piClust: A density based piRNA clustering algorithm.
Yinglei Lai, Fanni Zhang, Tapan Nayak, Reza Modarres, Norman Lee and Timothy McCaffrey. Concordant integrative gene set enrichment analysis of multiple large-scale two-sample expression data sets.
Denan Zhang, Guohua Wang and Yadong Wang. Transcriptional regulation prediction of antiestrogen resistance in breast cancer based on RNA polymerase II binding data.
Chia Yang Cheng, Chia-Han Chu, Fang-Rong Hsu, Chuan Yi Tang, Wen-Ching Wang, Hsing-Jien Kung and Pei-Ching Chang. An improved ChIP-seq peak detection system for simultaneously identifying post-translational modified transcription factors by combinatorial fusion, using SUMOylation as an example.
Victor A Vera-Ruiz, Kwok W Lau, John Robinson and Lars S Jermiin. Statistical tests to identify appropriate types of nucleotide sequence recoding in molecular phylogenetics.
Tzong-Yi Lee, Cheng-Tzung Lu, Tzu-Hsiu Cheng and Tzu-Hao Chang. Identification and characterization of lysine methylation sites on histones and non-histone proteins.
Ngoc Tu Le, Tu Bao Ho, Bich Hai Ho and Dang Hung Tran. A nucleosomal approach to inferring causal relationships of histone modification.
Lin Wei, Baofeng Lian, Yuannv Zhang, Wei Li, Jianren Gu, Xianghuo He and Lu Xie. Application of microRNA and mRNA expression profiling on prognostic biomarker discovery for hepatocellular carcinoma.
Yanping Xi, Yue Zhao, Li Wang and Fei Wang. Comparison on extreme pathways reveals nature of different biological processes.
Wenting Liu, Kui Miao, Kuiyu Chang, Guangxia Li, Jie Zheng and Jagath Rajapakse. Extracting Rate Changes in Transcriptional Regulation from MEDLINE Abstracts.
Hualong Yu and Jun Ni. An Improved Ensemble Learning Method for Classifying High-dimensional and Imbalanced Biomedicine Data.
Fei Hu and Jijun Tang. Probabilistic Reconstruction of Ancestral Genomes with Gene Insertions and Deletions.
Sherine Awad and Jin Chen. Inferring Transcription Factor Collaborations in Gene Regulatory Networks.
Lukas Folkman, Bela Stantic and Abdul Sattar. Towards sequence-based prediction of mutation-induced stability changes in unseen non-homologous proteins.
Yijie Wang and Xiaoning Qian. Joint clustering of protein interaction networks through Markov random walk.
Byung-Jun Yoon. Sequence Alignment by Passing Messages.
Yanglan Gan, Guobing Zou and Jihong Guan. A novel wavelet-based approach for predicting nucleosome positions using structural feature.
Abdollah Dehzangi, Kuldip Paliwal, James Lyons, Alok Sharma and Abdul Sattar. Proposing a Highly Accurate Protein structural Class Predictor using Segmentation-based Features.
Ben-Yang Liao and Andrew Chang. Accumulation of CTCF-Binding Sites Drives Expression Divergence between Tandemly Duplicated Genes in Humans.
Tianhai Tian and Kate Smith-Miles. Mathematical modeling of GATA-switching for regulating the differentiation of hematopoietic stem cell.
Fuqiang Wang, Jun Zhong, Ying Zhao, Jingfa Xiao, Jing Liu, Meng Dai, Guizhen Zheng, Li Zhang, Jun Yu, Jiayan Wu and Baoling Duan. Genome sequencing of high-penicillin producing industrial strain of Penicillium chrysogenum.
Minta Thomas, Anneleen Daemen and Bart De Moor. Maximum likelihood estimation of GEVD: Applications in Bioinformatics.
Ryoichi Kinoshita, Mitsuo Iwadate, Hideaki Umeyama and Y-H. Taguchi. Genes associated with genotype-specific DNA methylation in squamous cell carcinoma as candidate drug targets.
Qingyao Wu, Yunming Ye, Michael Ng, Ruichao Shi and Shen-Shyang Ho. Collective prediction of protein functions from protein-protein interaction networks.
Yushan Qiu, Takeyuki Tamura, Wai-Ki Ching and Tatsuya Akutsu. On Control of Singleton Attractors in Multiple Boolean Networks: Integer Programming-Based Method.
Kazuki Ichikawa and Shinichi Morishita. A simple but powerful heuristic method for accelerating k-means clustering of large-scale data in life science.
Peiying Ruan, Morihiro Hayashida, Osamu Maruyama and Tatsuya Akutsu. Prediction of heterotrimeric protein complexes by two-phase learning using neighboring kernels.
Yong Chen, Thibault Jacquemin, Shuyan Zhang and Rui Jiang. Prioritizing protein complexes implicated in human diseases by network optimization.
Yu Qian, Soren Besenbacher, Thomas Mailund and Mikkel Heide Schierup. Identifying Disease Associated Genes by Network Propagation.
Dipan Lal Shaw, A. S. M. Sohidull Islam, Masud Hasan and M. Sohel Rahman. Protein Folding in HP Model on Hexagonal Lattices with Diagonals.
Kousik Kundu and Rolf Backofen. Cluster Based Prediction of PDZ-Peptide Interactions.
Christine Lo, Boyko Kakaradov, Daniel Lokshtanov and Christina Boucher. SeeSite: Characterizing Relationships Between Splice Junctions and Splicing Enhancers.
Chunfang Zheng and David Sankoff. Practical halving; the Nelumbo nucifera evidence on early eudicot evolution.
Meng Lu, Hye-Seung Lee, David Hadley, Jianhua Huang and Xiaoning Qian. Supervised Categorical Principal Component Analysis for Genome-Wide Association Analyses.
Haifen Chen, Stefano Lonardi and Jie Zheng. Deciphering Histone Code of Transcriptional Regulation in Malaria Parasites by Large-scale Data Mining.
Daniel Asarnow and Rahul Singh. Automatic Classification of Protein Structures Using Low-Dimensional Structure Space Mappings.
Xiaowen Liu, Matthew Segar, Shuai Cheng Li and Sangtae Kim. Spectral probabilities of top-down tandem mass spectra.
Yi Wang, Henry C.M. Leung, S.M. Yiu and Francis Chin. MetaCluster-TA: Taxonomic Annotation for Metagenomic Data Based on Assembly-Assisted Binning.
Pablo Jaskowiak, Ricardo Campello and Ivan Costa. On The Selection of Appropriate Distances for Gene Expression Data Clustering.
Bin Xu and Jihong Guan. From function to interaction: a new paradigm for accurately predicting protein complexes based on protein-to-protein interaction networks.
Yao Lu, Jingyuan Deng, Hui Lu and Long Lu. Predicting Essential Genes for Identifying Potential Drug Targets In Aspergillus fumigatus.
Hyun-Hwan Jeong, Kyubum Wee and Kyung-Ah Sohn, Detection of pair-wise genomic interactions associated with clinical outcome in ovarian cancer patients using information theoretic measure.
Hongfei Cui and Xuegong Zhang, Using Sequence Signatures to Understand the Classification of Metagenome Samples.
Junfeng Li and Xuegong Zhang, Consistency of 16s rRNA Gene Sequencing Results with Different PCR Primers and Sequencing Runs.
Xiaojing Xie, Jihong Guan and Shuigeng Zhou, Similarity evaluation of DNA sequences based on frequent pattern mining and entropy.
Zhiyi Qin, Huijuan Feng, Xinyun Ma, Xavier Roge and Xuegong Zhang, A Robust Pipeline for Comparing RNA-Seq Samples of Two Classes.
Jia-Zhen Guo, Yo-Xiu Lin, Pei-Chun Chang, Chieh-Hsi Wu, Phillip C. Y. Sheu and Jeffrey J. P. Tsai, Compounds screening from traditional Chinese herbs for inhibition of in-stent restenosis in coronary atherosclerosis.
Martin Frith, LAST: statistically rigorous, large-scale sequence comparison.
Atsushi Fukushima, Makoto Suzuki, Makoto Kobayashi, Yozo Okazaki, Ryo Nakabayashi, Kenji Akiyama, Tetsuya Sakurai, Miyako Kusano, Masanori Arita and Kazuki Saito, Development of metabolite-profiling database in Arabidopsis: AtMetExpress - Meta-analysis of metabolome data.
Jiyuan An, John Lai, Melanie Lehman and Colleen Nelson. MiRNA Identification From RNA Sequencing Data.
Chia Yang Cheng, Chia-Han Chu, Fang-Rong Hsu and Chuan Yi Tang. Identification RNA Splicing Factors Interactions in Literature Using Interaction Key Words