imiRTP: a toolkit to genome-scale identification miRNA-target interactions in Arabidopsis thaliana

Jiandong Ding, Shusi Yu, Uwe Ohler, Jihong Guan and Shuigeng Zhou.

      Here, we present the first intergrated miRNA-target interaction (MTI) prediction and analysis toolkit -- imiRTP, for Arabidopsis thaliana microRNAs. By far, four popular tools(psRNATarget, TAPIR, UEA toolkit, WMD3) and four efficent fileters (multi-method, multiplicity, accessibility and Degradome-seq support) were intergrated. In futhur, more target prediction tools and filters will be considered.


      Currently the imiRTP program (version 1.0) is available only for the windows (Vista/Windows 7) platform. Microsoft .NET Framework 3.5 or higher version may be required.

  • Download the imiRTP toolkit: (coming soon).
  • Unzip it.
  • Run the imiRTP.exe and type "-h/-H/-help" to read the manual.

  • Supplemental data (right click and select save as):

    Other useful links:


    If you find any problem of executing the imiRTP, please contact jdding@fudan.edu.cn.