Master, Shanghai Key Laboratory of Intelligent Information Processing (IIPL), Fudan University
My research interests include data mining and algorithm. I am interested in particapting coding contests, and distributed computing.
Here is my Curriculum Vitae.
Exploiting Topic Modeling to Boost Metagenomic Sequences Binning.
Ruichang Zhang, Zhanzhan Cheng, Jihong Guan, Shuigeng Zhou
10th International Symposium on Bioinformatics Research and Applications (ISBRA 2014), Accepted.
(BMC Bioinformatics), Accepted. [pdf]
12th Asia Pacific Bioinformatics Conference (APBC 2014), Poster. [pdf]
A New Unsupervised Binning Approach for Metagenomic Sequences Based on N-grams and Automatic Feature Weighting
Ruiqi Liao, Ruichang Zhang, Jihong Guan, Shuigeng Zhou
IEEE transactions on computational biology and bioinformatics (TCBB), 2014. [pdf] [slides] [Windows_Executable] [Linux_Executable]
MCluster Usage : MCluster.exe [absolute path of input fasta file] [cluster number] [absolute path of output files]
Extracting K-mer features was implemented by Liao Ruiqi(Fudan) in Java, and SKWIC algorithm was implemented by Yiyuan(TongJi) in C++
1. Support assigning output directory
2. Normalizing vectors would be better
3. Getting better result by setting DeltaK 1 after extensive experiments
A Comparative Evaluation on Prediction Methods of Nucleosome Positioning.
Hui Liu, Ruichang Zhang, Wei Xiong, Ziheng Zhuang, Jihong Guan, Shuigeng Zhou
Briefings in Bioinformatics (Oxford publications), 2013. [pdf]