Ruichang Zhang

Master, Shanghai Key Laboratory of Intelligent Information Processing (IIPL), Fudan University

Email: "z...@gmail.com

My research interests include data mining and algorithm. I am interested in particapting coding contests, and distributed computing.

An interesting, turmoil demo

Here is my Curriculum Vitae.

Here is my MasterThesis Slide.

Publications

  • Exploiting Topic Modeling to Boost Metagenomic Sequences Binning.
    Ruichang Zhang, Zhanzhan Cheng, Jihong Guan, Shuigeng Zhou
    10th International Symposium on Bioinformatics Research and Applications (ISBRA 2014), Accepted.
    (BMC Bioinformatics), Accepted. [pdf]
    12th Asia Pacific Bioinformatics Conference (APBC 2014), Poster. [pdf]
  • A New Unsupervised Binning Approach for Metagenomic Sequences Based on N-grams and Automatic Feature Weighting
    Ruiqi Liao, Ruichang Zhang, Jihong Guan, Shuigeng Zhou
    IEEE transactions on computational biology and bioinformatics (TCBB), 2014. [pdf] [slides] [Windows_Executable] [Linux_Executable]

    MCluster Usage : MCluster.exe [absolute path of input fasta file] [cluster number] [absolute path of output files]

    Extracting K-mer features was implemented by Liao Ruiqi(Fudan) in Java, and SKWIC algorithm was implemented by Yiyuan(TongJi) in C++

    Update logs:
    2014.3.4
    1. Support assigning output directory
    2. Normalizing vectors would be better
    3. Getting better result by setting DeltaK 1 after extensive experiments
    2014.2.18
    MCluster available
  • A Comparative Evaluation on Prediction Methods of Nucleosome Positioning.
    Hui Liu, Ruichang Zhang, Wei Xiong, Ziheng Zhuang, Jihong Guan, Shuigeng Zhou
    Briefings in Bioinformatics (Oxford publications), 2013. [pdf]

Sports

Basketball, table tennis, swimming