Shanghai Key Lab of Intelligent Information Processing
School of Computer Science
Fudan University
 
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Software/Databases

Software

    Under constrction……

Databases

  • RMDB: an integrated database of single-cytosine-resolution DNA methylation in Oryza sativa.
    Paper: Tiansheng Zhu, Jihong Guan, Hui Liu and and Shuigeng Zhou. RMDB: an integrated database of single-cytosine-resolution DNA methylation in Oryza sativa. To appear in Current Bioinformatics.

  • MOBCdb: a comprehensive database integrating multi-omics data on breast cancer for precision medicine.
    Paper: Bingbing Xie#, Zifeng Yuan#, YadongYang, Zhidan Sun, Shuigeng Zhou* and Xiangdong Fang*. MOBCdb: a comprehensive database integrating multi-omics data on breast cancer for precision medicine. Breast Cancer Research and Treatment, 169(3), 625-632, 2018.

  • iHMS: a database integrating human histone modification data across developmental stages and tissues.
    Paper: Yanglan Gan, Han Tao, Jihong Guan, Shuigeng Zhou. iHMS: a database integrating human histone modification data across developmental stages and tissues. BMC Bioinformatics, 18(1): 103:1-103:9, 2017.

  • MeioBase: a comprehensive database for meiosis.
    Paper: Hao Li, Fanrui Meng, Chunce Guo, Yingxiang Wang, Xiaojing Xie, Tiansheng Zhu, Shuigeng Zhou, Hong Ma, Hongyan Shan and Hongzhi Kong. MeioBase: a comprehensive database for meiosis. Frontiers in Plant Science, Volume 5, Article 728, December 2014.

  • miRFANs: an integrated database for Arabidopsis thaliana microRNA function annotations.
    Paper: Hui Liu, Ting Jin, Ruiqi Liao, Linxia Wan, Bin Xu, Shuigeng Zhou* and Jihong Guan. miRFANs: an integrated database for Arabidopsis thaliana microRNA function annotations. BMC Plant Biology, 12:68, 2012.

Email: sgzhou AT fudan DOT edu DOT cn
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